RNA-Seq of Pseudomonas donghuensis : GacS - SRA

SRX24792844: RNA-Seq of Pseudomonas donghuensis : GacS
1 ILLUMINA (Illumina NovaSeq X) run: 19M spots, 5.7G bases, 1.6Gb downloads

Design: WT bacteria grown in modified King's B Culture grown cell harvested at 8hr post-inoculation (OD .02 start)

Submitted by: University of Pittsburgh

Study: Transcriptions of GacS in Pseudomonas donghuensis strain SVBP6

PRJNA1119972 • SRP511615 • All experiments • All runs

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We combined comparative transcriptomic, proteomic, and metabolomic approaches to identify novel GacS-dependent biosynthetic gene clusters (BGC) and/or extracellular specialized metabolites. Here, we deposit the transcriptomics that aided in pinpointed several GacS-activated gene clusters with biosynthetic functional features that had escaped in silico genome mining tools.

Sample:

SAMN41670802 • SRS21509971 • All experiments • All runs

Organism: Pseudomonas donghuensis

Library:

Name: SV3_1

Instrument: Illumina NovaSeq X

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: other

Layout: SINGLE

Runs: 1 run, 19M spots, 5.7G bases, 1.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR29275504	18,975,244	5.7G	1.6Gb	2024-07-16

ID:: 33118182

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